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  Publications, Software, and Online Modules

Taufer, M., Solorio, T., Licon, A., Mireles, D., and Leung, M.Y., and Johnson, K.K. (2008) RNAVLab: A Virtual Laboratory for Studying RNA Secondary Structures Based on Grid Computing Technology, Parallel Computing (to appear).

Chew, D.S.H., Choi, K.P., and Leung, M.Y. (2008) Stochastic Approaches to Predict Replication Origins in DNA Viral Genomes. Proceedings of the 2008 International Workshop for Applied Probability, July 2008, Compiegne, France (to appear).

Grosu, D., Chronopoulos, A.T., and Leung, M.Y. (2008) Cooperative Load Balancing in Distributed Systems. Concurrency and Computation: Practice and Experience (to appear).

Taufer, M., Solorio, T., Licon, A., Mireles, D., and Leung, M.Y. (2008) On the Effectiveness of Rebuilding RNA Secondary Structures from Sequence Chunks. Proceedings of the Seventh IEEE International Workshop on High Performance Computational Biology (HiCOMB'08), April 2008, Miami, Florida, USA (to appear).

Cruz-Cano, R., Chandran, D., and Leung, M.Y. (2007) Computational Prediction of Replication Origins in Herpesviruses. Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, April 2007, Honolulu, Hawaii, USA. 283 - 290.

Araiza, R., Taufer, M., and Leung, M.Y. (2007) Towards Optimal Scheduling for Global Computing under Probabilistic, Interval, and Fuzzy Uncertainty, with Potential Applications to Bioinformatics. Proceedings of the 2007 Annual Meeting of the North American Fuzzy Information Processing Society, June 2007, San Diego, California, USA, 520-525.

Taufer, M., Leung, M.Y., Johnson, K., Licon, A. (2007) RNAVLab: A Unified Environment for Computational RNA Structure Analysis Based on Grid Computing Technology. Proceedings of the Sixth IEEE International Workshop on High Performance Computational Biology (HiCOMB'07), March 2007, Long Beach, California, USA.

Chew, D.S.H., Leung, M.Y., and Choi, K.P. (2007) AT Excursion: a New Approach to Predict Replication Origins in Viral Genomes by Locating AT-rich Regions, BMC Bioinformatics, 8:163.

Leung, M.Y. (2006) Scan Statistics for Detecting Clusters, in Encyclopedia of Measurement and Statistics. S11-14, Salkind, N.J., Editor, SAGE Publications, Thousand Oaks.

McMullin, B.T., Leung, M.Y., Shanbag, A.S., McNulty, D., et. al. (2006) Correlating Subjective and Objective Descriptors of Ultra High Molecular Weight Wear Particles from Total Joint Prostheses, Biomaterials 27:752-757.

Chew, D.S.H., Choi, K.P., and Leung, M.Y. (2005) Scoring Schemes of Palindrome Clusters for More Sensitive Prediction of Replication Origins in Herpesviruses, Nucleic Acid Research 33 (15): e134.

Leung, M.Y., Choi, K.P., Xia, A. and Chen, L.H.Y. (2005) Nonrandom Clusters of Palindromes in Herpesvirus Genomes. J. Computational Biology 12(3), 331-354.

Chew, D.S.H., Choi, K.P., Heidner, H. and Leung, M.Y. (2004) Palindromes in SARS and Other Coronaviruses, INFORMS J. Comp. 16(4), 331-340.

Leung, M.Y. (2003) An update of Bioinformatics Information Modules for Education and Research (BIMER). Available at http://www.math.utep.edu/Faculty/mleung/BIMER.

Grosu, D., Chronopoulos, A.T. and Leung, M.Y. (2002) Load Balancing in Distributed Systems: An Approach Using Cooperative Games; Proceedings of the 16th IEEE International Parallel and Distributed Processing Symposium, April 15-19, 2002, Fort Lauderdale, Florida, USA, IEEE Computer Science Press, 52-61.

Leung, M.Y. (2002) An update of Probability Research Information and Statistics Education Modules (PRISEM). Available at http://www.math.utep.edu/Faculty/mleung/PRISEM.

Leung, M.Y. and Garnett, K. (2001) Bioinformatics Information Modules for Education and Research (BIMER). Interactive modules online or on CD for a project on web-based education funded by NSF Course, Curriculum, and Laboratory Improvement Grant.

Leung, M.Y. and Garnett, K. (2000) Probability Research Information and Statistics Education Modules (PRISEM). Interactive modules online or on CD for a project on web-based education funded by NSF Course, Curriculum, and Laboratory Improvement Grant.

Leung, M.Y. and Yamashita, T.E., Applications of the scan statistic in DNA sequence analysis, (1999) in Recent Developments in Scan Statistics and Applications, 269-286. Ed. Balakrishnan, N. and Glaz, J., Birkhauser Publishers.

Leung, M.Y. (1998) An update of the unix-based Molecular Package (MOLPAC) consists of software programs for multiple sequence comparisons allowing matching errors (funded by grants from Texas Higher Education Coordinating Board Advanced Research Program and San Antonio Area Foundation). The original version of two program modules (REP and MATCH) was integrated with GenToolsTM (1993) distributed by the High Performance Computing Facility at the University of Texas at Austin. Current version of MOLPAC in C++ is available free to the public.

Leung, M.Y., Marsh, G.M. and Speed, T.P., (1996) Over and under representation of short oligonucleotides in herpes virus genomes, J. Computational Biology, 3(3), 345-360.

Billakanti, S.R., St. Julien, S.A., and Leung, M.Y. (1996) A graphics tool for visualizing genomic sequence features, Proc. First World Congress of Computational Medicine, 310 - 319.

Schachtel, G., Leung, M.Y., and Yu, H.S., (1996) Approximationsformeln der scan-statistik zur analyse langer DNA-Sequenzen, in Biometrische Berichte Band 4 - Biometrie der Genomanalyse, 41-68.

Leung, M.Y. (1995) A tool for identifying nonrandom clusters of point markers on DNA sequences, Proceedings of the Third International Conference on Bioinformatics and Genome Research, 351-364.

Leung, M.Y., Schachtel, G., and Yu, H.S., (1994) Scan statistics and DNA sequence analysis: The search for an origin of replication in a virus, Nonlinear World 1, 445-471.

Barron, S., Leung, M.Y., Witten, M., and Wu, C.H., GenTools TM: (1993), Integrated Sequence Analysis Tools for Distributed High Performance Platform, distributed by the High Performance Computing Facility, University of Texas at Austin.

Leung, M.Y. and Srinivasan, P. (1992) A unix-based Molecular Package (MOLPAC) consists of software programs for multiple sequence comparisons allowing matching errors (funded by grants from Texas Higher Education Coordinating Board Advanced Research Program and San Antonio Area Foundation).

Leung, M.Y., Burge, C., Blaisdell, B.E., and Karlin, S., (1991) An efficient algorithm for identifying matches with errors in multiple long molecular sequences, J. Mol. Biol.  221, 1367-1378.

Karlin, S. and Leung, M.Y., Some Limit Theorems on Distributional Patterns of Balls in Urns, (1991) Ann. Appl. Prob. 1 (4) 513-538.

Karlin, S., Morris, M., and Ghandor, G. and Leung, M.Y., (1988) Efficient algorithms for molecular sequence analysis, Proc. Natl. Acad. Sci. USA,  85,  841-845.

Karlin, S., Morris, M., and Ghandor, G. and Leung, M.Y., (1988) Algorithms for identifying local molecular sequence features, Comp. Appl. Biosci., 4 (1)  41-51.

Lam, K., Leung, M.Y. and Siu, M.K., (1983) Self-organizing files with dependent accesses, J. Appl. Prob.  (1984) 21, 343-359.

Lam, K., Leung, M.Y. and Siu, M.K., (1982) Self-organizing files.  Undergraduate Mathematics and its Application Module Unit 612, Education Development Center, Massachusetts.

Lam, K., Leung, M.Y. and Siu, M.K., (1982) A problem on processors. Chinese J. Math. 10 (1) 9-13.

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