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Taufer, M., Solorio, T., Licon, A.,
Mireles, D., and Leung, M.Y., and Johnson, K.K. (2008) RNAVLab: A Virtual
Laboratory for Studying RNA Secondary Structures Based on Grid Computing
Technology, Parallel Computing (to appear).
Chew, D.S.H., Choi, K.P., and Leung, M.Y.
(2008) Stochastic Approaches to Predict Replication Origins in DNA Viral
Genomes. Proceedings of the 2008 International Workshop for Applied
Probability, July 2008, Compiegne, France (to appear).
Grosu, D., Chronopoulos, A.T., and Leung,
M.Y. (2008) Cooperative Load Balancing in Distributed Systems. Concurrency
and Computation: Practice and Experience (to appear).
Taufer, M., Solorio, T., Licon, A.,
Mireles, D., and Leung, M.Y. (2008) On the Effectiveness of Rebuilding RNA
Secondary Structures from Sequence Chunks. Proceedings of the Seventh IEEE
International Workshop on High Performance Computational Biology
(HiCOMB'08), April 2008, Miami, Florida, USA (to appear).
Cruz-Cano, R., Chandran, D., and Leung,
M.Y. (2007) Computational Prediction of Replication Origins in Herpesviruses.
Proceedings of the 2007 IEEE Symposium on Computational Intelligence in
Bioinformatics and Computational Biology, April 2007, Honolulu, Hawaii,
USA. 283 - 290.
Araiza, R., Taufer, M., and Leung, M.Y.
(2007) Towards Optimal Scheduling for Global Computing under Probabilistic,
Interval, and Fuzzy Uncertainty, with Potential Applications to
Bioinformatics. Proceedings of the 2007 Annual Meeting of the North American
Fuzzy Information Processing Society, June 2007, San Diego, California, USA,
520-525.
Taufer, M., Leung, M.Y., Johnson, K.,
Licon, A. (2007) RNAVLab: A Unified Environment for Computational RNA
Structure Analysis Based on Grid Computing Technology.
Proceedings of the Sixth IEEE International Workshop on High Performance
Computational Biology (HiCOMB'07), March 2007, Long Beach, California,
USA.
Chew, D.S.H., Leung, M.Y., and Choi, K.P.
(2007) AT Excursion: a New Approach to Predict Replication Origins in Viral
Genomes by Locating AT-rich Regions,
BMC Bioinformatics, 8:163.
Leung, M.Y. (2006) Scan Statistics for
Detecting Clusters, in
Encyclopedia of Measurement and Statistics. S11-14, Salkind, N.J.,
Editor, SAGE Publications, Thousand Oaks.
McMullin, B.T., Leung, M.Y., Shanbag, A.S.,
McNulty, D., et. al. (2006) Correlating Subjective and
Objective Descriptors of Ultra High Molecular Weight Wear Particles from
Total Joint Prostheses, Biomaterials 27:752-757.
Chew, D.S.H., Choi, K.P., and Leung, M.Y.
(2005) Scoring Schemes of Palindrome Clusters for More Sensitive Prediction
of Replication Origins in Herpesviruses,
Nucleic Acid
Research 33 (15): e134.
Leung, M.Y., Choi, K.P., Xia, A. and Chen,
L.H.Y. (2005) Nonrandom Clusters of Palindromes in Herpesvirus Genomes.
J. Computational Biology 12(3), 331-354.
Chew, D.S.H., Choi, K.P., Heidner, H. and
Leung, M.Y. (2004) Palindromes in SARS and Other Coronaviruses,
INFORMS
J. Comp. 16(4), 331-340.
Leung, M.Y. (2003) An update of
Bioinformatics Information Modules for Education and Research (BIMER).
Available at
http://www.math.utep.edu/Faculty/mleung/BIMER.
Grosu, D., Chronopoulos, A.T. and Leung,
M.Y. (2002) Load Balancing in Distributed Systems: An Approach Using
Cooperative Games;
Proceedings of the 16th IEEE International
Parallel and Distributed Processing Symposium, April 15-19, 2002, Fort
Lauderdale, Florida, USA, IEEE Computer Science Press, 52-61.
Leung, M.Y. (2002) An update of
Probability Research Information and Statistics Education Modules (PRISEM).
Available at
http://www.math.utep.edu/Faculty/mleung/PRISEM.
Leung, M.Y. and Garnett, K. (2001)
Bioinformatics Information Modules for Education and Research (BIMER).
Interactive modules online or on CD for a project on web-based education
funded by NSF Course, Curriculum, and Laboratory Improvement Grant.
Leung, M.Y. and Garnett, K. (2000)
Probability Research Information and Statistics Education Modules (PRISEM).
Interactive modules online or on CD for a project on web-based education funded
by NSF Course, Curriculum, and Laboratory Improvement Grant.
Leung, M.Y. and Yamashita, T.E.,
Applications of the scan statistic in DNA sequence analysis, (1999) in
Recent Developments in Scan Statistics and Applications, 269-286. Ed.
Balakrishnan, N. and Glaz, J., Birkhauser Publishers.
Leung, M.Y. (1998) An update of the unix-based
Molecular Package (MOLPAC) consists of software programs for multiple
sequence comparisons allowing matching errors (funded by grants from Texas
Higher Education Coordinating Board Advanced Research Program and San
Antonio Area Foundation). The original version of two program modules (REP
and MATCH) was integrated with GenToolsTM (1993) distributed by the High
Performance Computing Facility at the University of Texas at Austin. Current
version of MOLPAC in C++ is available free to the public.
Leung,
M.Y., Marsh, G.M. and Speed, T.P., (1996) Over and under representation of
short oligonucleotides in herpes virus genomes, J. Computational Biology,
3(3), 345-360.
Billakanti, S.R., St. Julien, S.A., and Leung, M.Y. (1996) A graphics tool
for visualizing genomic sequence features, Proc.
First World Congress of
Computational Medicine,
310 - 319.
Schachtel, G., Leung, M.Y., and Yu, H.S.,
(1996) Approximationsformeln der scan-statistik zur analyse langer DNA-Sequenzen,
in Biometrische Berichte Band 4 - Biometrie der Genomanalyse, 41-68.
Leung, M.Y. (1995) A tool for identifying
nonrandom clusters of point markers on DNA sequences, Proceedings of the
Third International Conference on Bioinformatics and Genome Research,
351-364.
Leung,
M.Y., Schachtel, G., and Yu, H.S., (1994) Scan statistics and DNA sequence
analysis: The search for an origin of replication in a virus, Nonlinear
World 1, 445-471.
Barron, S., Leung, M.Y., Witten, M., and Wu,
C.H., GenTools TM: (1993), Integrated Sequence Analysis Tools for
Distributed High Performance Platform, distributed by the High Performance
Computing Facility, University of Texas at Austin.
Leung, M.Y. and Srinivasan, P. (1992) A unix-based
Molecular Package (MOLPAC) consists of software programs for multiple
sequence comparisons allowing matching errors (funded by grants from Texas
Higher Education Coordinating Board Advanced Research Program and San
Antonio Area Foundation).
Leung,
M.Y., Burge, C., Blaisdell, B.E., and Karlin, S., (1991) An efficient
algorithm for identifying matches with errors in multiple long molecular
sequences, J. Mol. Biol. 221, 1367-1378.
Karlin,
S. and Leung, M.Y., Some Limit Theorems on Distributional Patterns of Balls
in Urns, (1991)
Ann. Appl. Prob. 1 (4) 513-538.
Karlin, S., Morris, M., and Ghandor, G. and Leung, M.Y., (1988) Efficient
algorithms for molecular sequence analysis,
Proc. Natl. Acad. Sci.
USA,
85, 841-845.
Karlin,
S., Morris, M., and Ghandor, G. and Leung, M.Y., (1988) Algorithms for
identifying local molecular sequence features, Comp. Appl. Biosci., 4
(1) 41-51.
Lam, K.,
Leung, M.Y. and Siu, M.K., (1983) Self-organizing files with dependent
accesses, J. Appl. Prob. (1984) 21, 343-359.
Lam, K., Leung, M.Y. and Siu, M.K., (1982)
Self-organizing files. Undergraduate Mathematics and its Application
Module Unit 612, Education Development Center, Massachusetts.
Lam, K., Leung, M.Y. and Siu, M.K., (1982)
A problem on processors. Chinese J. Math. 10 (1) 9-13. |